Yeah, I'm not sure at all of the differences between the FA20 and FA20B. The "B" of course has the Toyota D4S system, and originally the engine was designed in concert with Toyota and it's my understanding that Toyota played a key role in the head design so it would work with both their D4S and the Subaru AVCS variable valve timing system.
Given that the FA20 has no D4S, I suppose that the head is different, and if so, perhaps other changes as well.
I do know that I'd much rather have either FA-series engine than any FB engine. The new block and bottom end of the FA20B are fantastic, and the D4S system of course is pretty much the best DI style system on the market.